/cemt/methylation/A54773_3_lane_gembs

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SAMPLE A54773_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26678433 15807983 59.25 %
NonRefCpG 349569 156540 44.78 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A54773_3_lane_gembs_coverage_refCpG.png ./IMG//A54773_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A54773_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A54773_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A54773_3_lane_gembs_quality_refcpg.png ./IMG//A54773_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A54773_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5960425 11.78 % 1863465 5.37 % 126190 19.52 % 30229 7.96 %
Intermediate (0.3-0.7) 12323668 24.36 % 6777334 19.52 % 164666 25.47 % 79016 20.81 %
Methylated (0.7-1) 32298985 63.85 % 26071985 75.11 % 355530 55.00 % 270445 71.23 %
Median Methylation 0.800 0.850 0.740 0.840