/EXTERNAL Roadmap/mapping_coverage/K006530_K006531_2_lane_gembs
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SAMPLE K006530_K006531_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
8470740850 |
100% |
562980869908 |
100% |
| Mapped |
8470740850 |
100.00 % |
562980869908 |
100.00 % |
| Passed |
5674033082 |
66.98 % |
492339378506 |
87.45 % |
| NotPassed |
2796707768 |
33.02 % |
70641491402 |
12.55 % |
| |
|
|
|
|
| LowMAPQ |
704750371 |
8.32 % |
70641491402 |
12.55 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
2091957397 |
24.70 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
285366207953 |
100% |
| Passed |
265861404585 |
93.16 % |
| Trimmed |
14192219919 |
4.97 % |
| Clipped |
300879991 |
0.11 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
5011703458 |
1.76 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |