/EXTERNAL Roadmap/methylation/K006534_1_lane_gembs

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SAMPLE K006534_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26982608 23953576 88.77 %
NonRefCpG 241646 193976 80.27 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006534_1_lane_gembs_coverage_refCpG.png ./IMG//K006534_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006534_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006534_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006534_1_lane_gembs_quality_refcpg.png ./IMG//K006534_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006534_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5768593 10.82 % 5232221 10.80 % 27156 5.89 % 16468 4.17 %
Intermediate (0.3-0.7) 9090675 17.06 % 8216648 16.97 % 87663 19.00 % 70982 17.98 %
Methylated (0.7-1) 38440378 72.12 % 34983863 72.23 % 346590 75.12 % 307292 77.85 %
Median Methylation 0.850 0.850 0.850 0.860