/EXTERNAL Roadmap/mapping_coverage/K006552_K006553_K006554_K006555_K006556_K006557_K006558_7_lane_gembs
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SAMPLE K006552_K006553_K006554_K006555_K006556_K006557_K006558_7_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
3557904831 |
100% |
210907767995 |
100% |
| Mapped |
3555355329 |
99.93 % |
210652405837 |
99.88 % |
| Passed |
2497852590 |
70.21 % |
154624609047 |
73.31 % |
| NotPassed |
1057502739 |
29.72 % |
56027796790 |
26.57 % |
| |
|
|
|
|
| LowMAPQ |
608522183 |
17.10 % |
54161742058 |
25.68 % |
| MateUnmapped |
2549502 |
0.07 % |
254538242 |
0.12 % |
| Duplicate |
435820704 |
12.25 % |
550069532 |
0.26 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
478102 |
0.01 % |
47810200 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12681750 |
0.36 % |
1268175000 |
0.60 % |
| Unmapped |
2549502 |
0.07 % |
255362158 |
0.12 % |
Base Level Counts
| Bases |
# |
% |
| Total |
125098836474 |
100% |
| Passed |
105603566089 |
84.42 % |
| Trimmed |
6138861200 |
4.91 % |
| Clipped |
3826532727 |
3.06 % |
| Overlapping |
3380860166 |
2.70 % |
| LowQuality |
6149016292 |
4.92 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |