/EXTERNAL Roadmap/methylation/K006552_K006553_K006554_K006555_K006556_K006557_K006558_7_lane_gembs
BACK
SAMPLE K006552_K006553_K006554_K006555_K006556_K006557_K006558_7_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26672539 |
20893516 |
78.33 % |
| NonRefCpG |
335243 |
141388 |
42.17 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
10020226 |
19.27 % |
7742357 |
17.29 % |
183613 |
30.22 % |
67545 |
17.92 % |
| Intermediate (0.3-0.7) |
13473404 |
25.91 % |
10823564 |
24.17 % |
172765 |
28.43 % |
107262 |
28.45 % |
| Methylated (0.7-1) |
28500123 |
54.81 % |
26220961 |
58.55 % |
251283 |
41.35 % |
202176 |
53.63 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.740 |
|
0.770 |
|
0.590 |
|
0.730 |
|