/EXTERNAL Roadmap/K006537_1_lane_gembs

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SAMPLE K006537_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1343242892 100.00 % 671621446 100.00 % 671621446 100.00 %
General Reads 1315415337 97.93 % 659334047 98.17 % 656081290 97.69 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1216 0.00 % 610 0.00 % 606 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 27826339 2.07 % 12286789 1.83 % 15539550 2.31 %
Bisulfite_reads C2T 679813734 50.61 % 340756112 50.74 % 339057622 50.48 %
Bisulfite_reads G2A 635602819 47.32 % 318578545 47.43 % 317024274 47.20 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 514291041
Average Unique 76.57 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 49084439741 36.18 % 18638118531 27.75 % 30446321210 44.44 %
Base Counts Overall C 18323913694 13.51 % 1055004347 1.57 % 17268909347 25.21 %
Base Counts Overall G 18532093913 13.66 % 17337893602 25.81 % 1194200311 1.74 %
Base Counts Overall T 48321040865 35.62 % 29427938132 43.82 % 18893102733 27.58 %
Base Counts Overall N 1406043879 1.04 % 703189988 1.05 % 702853891 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9963303022470499
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 625202462



Mapping Quality

Mapping Quality Histogram
K006537_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006537_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
SRX142784_4_lanes