/EXTERNAL Roadmap/mapping_coverage/K006537_1_lane_gembs
BACK
SAMPLE K006537_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1255372456 |
100% |
114911238712 |
100% |
| Mapped |
1242958990 |
99.01 % |
113666639354 |
98.92 % |
| Passed |
917723232 |
73.10 % |
81148570604 |
70.62 % |
| NotPassed |
325235758 |
25.91 % |
32518068750 |
28.30 % |
| |
|
|
|
|
| LowMAPQ |
246616636 |
19.64 % |
24661663600 |
21.46 % |
| MateUnmapped |
12413466 |
0.99 % |
1238093842 |
1.08 % |
| Duplicate |
60855613 |
4.85 % |
6080054249 |
5.29 % |
| BadOrientation |
32 |
0.00 % |
3200 |
0.00 % |
| LargeInsertSize |
1023052 |
0.08 % |
102305200 |
0.09 % |
| |
|
|
|
|
| NotCorrectlyAligned |
16740425 |
1.33 % |
1674042501 |
1.46 % |
| Unmapped |
12413466 |
0.99 % |
1244599358 |
1.08 % |
Base Level Counts
| Bases |
# |
% |
| Total |
91757131628 |
100% |
| Passed |
76014111681 |
82.84 % |
| Trimmed |
3783078224 |
4.12 % |
| Clipped |
216996767 |
0.24 % |
| Overlapping |
10391564257 |
11.33 % |
| LowQuality |
1351380699 |
1.47 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |