/EXTERNAL Roadmap/methylation/K006537_1_lane_gembs

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SAMPLE K006537_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26809476 23102471 86.17 %
NonRefCpG 358539 177649 49.55 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006537_1_lane_gembs_coverage_refCpG.png ./IMG//K006537_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006537_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006537_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006537_1_lane_gembs_quality_refcpg.png ./IMG//K006537_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006537_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5822920 11.36 % 5044001 10.92 % 147758 22.46 % 39802 9.58 %
Intermediate (0.3-0.7) 5759898 11.24 % 4323757 9.36 % 122280 18.59 % 57947 13.95 %
Methylated (0.7-1) 39674071 77.40 % 36819259 79.72 % 387816 58.95 % 317602 76.47 %
Median Methylation 0.890 0.900 0.800 0.890