/EXTERNAL Roadmap/mapping_coverage/K006559_K006560_K006561_K006562_K006563_5_lane_gembs
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SAMPLE K006559_K006560_K006561_K006562_K006563_5_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2663500050 |
100% |
135456018990 |
100% |
| Mapped |
2663500050 |
100.00 % |
135456018990 |
100.00 % |
| Passed |
1986439036 |
74.58 % |
104408177447 |
77.08 % |
| NotPassed |
677061014 |
25.42 % |
31047841543 |
22.92 % |
| |
|
|
|
|
| LowMAPQ |
377542063 |
14.17 % |
31047841543 |
22.92 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
299518951 |
11.25 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
82347134107 |
100% |
| Passed |
66455092809 |
80.70 % |
| Trimmed |
4619523345 |
5.61 % |
| Clipped |
2251185471 |
2.73 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
9021332482 |
10.96 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |