/EXTERNAL Roadmap/methylation/K006559_K006560_K006561_K006562_K006563_5_lane_gembs
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SAMPLE K006559_K006560_K006561_K006562_K006563_5_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
25796332 |
15642835 |
60.64 % |
| NonRefCpG |
405361 |
128296 |
31.65 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
3429852 |
7.21 % |
929619 |
2.83 % |
177288 |
25.29 % |
31008 |
9.12 % |
| Intermediate (0.3-0.7) |
10261811 |
21.58 % |
5527465 |
16.80 % |
170055 |
24.26 % |
68347 |
20.11 % |
| Methylated (0.7-1) |
33850521 |
71.20 % |
26449067 |
80.38 % |
353639 |
50.45 % |
240544 |
70.77 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.820 |
|
0.850 |
|
0.700 |
|
0.820 |
|