/cemt/mapping_coverage/A59692_3_lane_gembs
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SAMPLE A59692_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1429984279 |
100% |
166698282148 |
100% |
| Mapped |
1416793625 |
99.08 % |
165049450398 |
99.01 % |
| Passed |
1221100606 |
85.39 % |
140587823023 |
84.34 % |
| NotPassed |
195693019 |
13.68 % |
24461627375 |
14.67 % |
| |
|
|
|
|
| LowMAPQ |
161782220 |
11.31 % |
20222777500 |
12.13 % |
| MateUnmapped |
13190654 |
0.92 % |
1648831750 |
0.99 % |
| Duplicate |
7098138 |
0.50 % |
887267250 |
0.53 % |
| BadOrientation |
10 |
0.00 % |
1250 |
0.00 % |
| LargeInsertSize |
7878 |
0.00 % |
984750 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
26804773 |
1.87 % |
3350596625 |
2.01 % |
| Unmapped |
13190654 |
0.92 % |
1648831750 |
0.99 % |
Base Level Counts
| Bases |
# |
% |
| Total |
152623329125 |
100% |
| Passed |
134186150077 |
87.92 % |
| Trimmed |
5635950152 |
3.69 % |
| Clipped |
317125865 |
0.21 % |
| Overlapping |
11718380237 |
7.68 % |
| LowQuality |
765722794 |
0.50 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |