/cemt/methylation/A59692_3_lane_gembs

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SAMPLE A59692_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27033991 22892034 84.68 %
NonRefCpG 284046 205777 72.44 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A59692_3_lane_gembs_coverage_refCpG.png ./IMG//A59692_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A59692_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A59692_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A59692_3_lane_gembs_quality_refcpg.png ./IMG//A59692_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A59692_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 10542518 19.79 % 8322799 17.46 % 123529 22.86 % 84656 19.34 %
Intermediate (0.3-0.7) 10163022 19.08 % 8421048 17.67 % 114551 21.19 % 82142 18.76 %
Methylated (0.7-1) 32563006 61.13 % 30910474 64.86 % 302387 55.95 % 271012 61.90 %
Median Methylation 0.820 0.840 0.770 0.830