/cemt/A59694_3_lane_gembs

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SAMPLE A59694_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1409436194 100.00 % 704718097 100.00 % 704718097 100.00 %
General Reads 1392387061 98.79 % 698482562 99.12 % 693904499 98.47 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2095544 0.15 % 1050006 0.15 % 1045538 0.15 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 14953589 1.06 % 5185529 0.74 % 9768060 1.39 %
Bisulfite_reads C2T 709978299 50.37 % 356090211 50.53 % 353888088 50.22 %
Bisulfite_reads G2A 684504306 48.57 % 343442357 48.73 % 341061949 48.40 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 604453260
Average Unique 85.77 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 69828945516 39.32 % 27783173368 31.29 % 42045772148 47.35 %
Base Counts Overall C 18132801424 10.21 % 663628746 0.75 % 17469172678 19.67 %
Base Counts Overall G 17935944993 10.10 % 17304380700 19.49 % 631564293 0.71 %
Base Counts Overall T 70078103875 39.46 % 42295133290 47.63 % 27782970585 31.29 %
Base Counts Overall N 1613164636 0.91 % 748164118 0.84 % 865000518 0.97 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.996413432326777
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 677310439



Mapping Quality

Mapping Quality Histogram
A59694_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A59694_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C907DANXX_3_1
C8W89ANXX_8_1
C8W89ANXX_7_1