/cemt/mapping_coverage/A59694_3_lane_gembs
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SAMPLE A59694_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1385103968 |
100% |
160632092820 |
100% |
| Mapped |
1373099790 |
99.13 % |
159131570570 |
99.07 % |
| Passed |
1198413284 |
86.52 % |
137295757320 |
85.47 % |
| NotPassed |
174686506 |
12.61 % |
21835813250 |
13.59 % |
| |
|
|
|
|
| LowMAPQ |
143320636 |
10.35 % |
17915079500 |
11.15 % |
| MateUnmapped |
12004178 |
0.87 % |
1500522250 |
0.93 % |
| Duplicate |
7285003 |
0.53 % |
910625375 |
0.57 % |
| BadOrientation |
8 |
0.00 % |
1000 |
0.00 % |
| LargeInsertSize |
6768 |
0.00 % |
846000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
24074091 |
1.74 % |
3009261375 |
1.87 % |
| Unmapped |
12004178 |
0.87 % |
1500522250 |
0.93 % |
Base Level Counts
| Bases |
# |
% |
| Total |
149788324875 |
100% |
| Passed |
131050755345 |
87.49 % |
| Trimmed |
5526520951 |
3.69 % |
| Clipped |
303056183 |
0.20 % |
| Overlapping |
12189511372 |
8.14 % |
| LowQuality |
718481024 |
0.48 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |