/cemt/methylation/A59694_3_lane_gembs

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SAMPLE A59694_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26932860 23108033 85.80 %
NonRefCpG 267940 198622 74.13 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A59694_3_lane_gembs_coverage_refCpG.png ./IMG//A59694_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A59694_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A59694_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A59694_3_lane_gembs_quality_refcpg.png ./IMG//A59694_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A59694_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6051830 11.40 % 3811726 7.97 % 54310 10.74 % 24651 5.95 %
Intermediate (0.3-0.7) 10180548 19.18 % 8606273 17.99 % 105335 20.84 % 75611 18.25 %
Methylated (0.7-1) 36855309 69.42 % 35413749 74.04 % 345857 68.42 % 313989 75.80 %
Median Methylation 0.830 0.850 0.820 0.850