/EXTERNAL BLUEPRINT/mapping_coverage/K010523_1_lane_gembs
BACK
SAMPLE K010523_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
338860254 |
100% |
32879645464 |
100% |
| Mapped |
334252088 |
98.64 % |
32414220698 |
98.58 % |
| Passed |
280911809 |
82.90 % |
27026852519 |
82.20 % |
| NotPassed |
53340279 |
15.74 % |
5387368179 |
16.39 % |
| |
|
|
|
|
| LowMAPQ |
39487288 |
11.65 % |
3988216088 |
12.13 % |
| MateUnmapped |
4608166 |
1.36 % |
465424766 |
1.42 % |
| Duplicate |
5389925 |
1.59 % |
544382425 |
1.66 % |
| BadOrientation |
8 |
0.00 % |
808 |
0.00 % |
| LargeInsertSize |
1924 |
0.00 % |
194324 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
8461134 |
2.50 % |
854574534 |
2.60 % |
| Unmapped |
4608166 |
1.36 % |
465424766 |
1.42 % |
Base Level Counts
| Bases |
# |
% |
| Total |
28304980532 |
100% |
| Passed |
25302503116 |
89.39 % |
| Trimmed |
1320762222 |
4.67 % |
| Clipped |
55587559 |
0.20 % |
| Overlapping |
1222540454 |
4.32 % |
| LowQuality |
403587181 |
1.43 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |