/EXTERNAL BLUEPRINT/methylation/K010523_1_lane_gembs

BACK

SAMPLE K010523_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 23599054 4731062 20.05 %
NonRefCpG 361552 40563 11.22 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K010523_1_lane_gembs_coverage_refCpG.png ./IMG//K010523_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K010523_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K010523_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K010523_1_lane_gembs_quality_refcpg.png ./IMG//K010523_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K010523_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3580724 9.98 % 525548 4.86 % 150619 26.28 % 17773 13.48 %
Intermediate (0.3-0.7) 10934106 30.47 % 2304856 21.34 % 179326 31.28 % 33562 25.45 %
Methylated (0.7-1) 21375648 59.56 % 7972336 73.80 % 243279 42.44 % 80530 61.07 %
Median Methylation 0.770 0.850 0.620 0.790