/EXTERNAL BLUEPRINT/K006389_K006402_19_lane_gembs/UMCG00014.Bisulfite-Seq.DNA_Methylation.EGAX00001345060_11

BACK

SAMPLE K006389_K006402_19_lane_gembs LANE UMCG00014.Bisulfite-Seq.DNA_Methylation.EGAX00001345060_11

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1170565602 100.00 % 585282801 100.00 % 585282801 100.00 %
General Reads 1123158463 95.95 % 563137870 96.22 % 560020593 95.68 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 22811599 1.95 % 11430921 1.95 % 11380678 1.94 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 24595540 2.10 % 10714010 1.83 % 13881530 2.37 %
Bisulfite_reads C2T 600737212 51.32 % 301216414 51.47 % 299520798 51.18 %
Bisulfite_reads G2A 545232850 46.58 % 273352377 46.70 % 271880473 46.45 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 466281628
Average Unique 79.67 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 42919005413 35.95 % 16880251718 28.28 % 26038753695 43.62 %
Base Counts Overall C 16229125735 13.59 % 889870188 1.49 % 15339255547 25.69 %
Base Counts Overall G 16403105398 13.74 % 15540064766 26.03 % 863040632 1.45 %
Base Counts Overall T 42630033795 35.70 % 25793871736 43.21 % 16836162059 28.20 %
Base Counts Overall N 1216421063 1.02 % 594787294 1.00 % 621633769 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9993399846429497
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 556700212



Mapping Quality

Mapping Quality Histogram
UMCG00014.Bisulfite-Seq.DNA_Methylation.EGAX00001345060_11.mapq.png



Read Length

Read Length Reads
101 585282801
101 585282801



Insert Size Plot

Insert Size Histogram
UMCG00014.Bisulfite-Seq.DNA_Methylation.EGAX00001345060_11.isize.png