/EXTERNAL BLUEPRINT/mapping_coverage/K006389_K006402_19_lane_gembs
BACK
SAMPLE K006389_K006402_19_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1952011150 |
100% |
176782600570 |
100% |
| Mapped |
1934303659 |
99.09 % |
174994143979 |
98.99 % |
| Passed |
1604043724 |
82.17 % |
141637890544 |
80.12 % |
| NotPassed |
330259935 |
16.92 % |
33356253435 |
18.87 % |
| |
|
|
|
|
| LowMAPQ |
283649014 |
14.53 % |
28648550414 |
16.21 % |
| MateUnmapped |
17707491 |
0.91 % |
1788456591 |
1.01 % |
| Duplicate |
19277049 |
0.99 % |
1946981949 |
1.10 % |
| BadOrientation |
56 |
0.00 % |
5656 |
0.00 % |
| LargeInsertSize |
20884 |
0.00 % |
2109284 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
27312932 |
1.40 % |
2758606132 |
1.56 % |
| Unmapped |
17707491 |
0.91 % |
1788456591 |
1.01 % |
Base Level Counts
| Bases |
# |
% |
| Total |
161998624275 |
100% |
| Passed |
133179253741 |
82.21 % |
| Trimmed |
6996422305 |
4.32 % |
| Clipped |
175124265 |
0.11 % |
| Overlapping |
20185609466 |
12.46 % |
| LowQuality |
1462214498 |
0.90 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |