/EXTERNAL BLUEPRINT/K006371_8_lane_gembs/S00V65.Bisulfite-Seq.DNA_Methylation.EGAX00001340587_8

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SAMPLE K006371_8_lane_gembs LANE S00V65.Bisulfite-Seq.DNA_Methylation.EGAX00001340587_8

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1242739422 100.00 % 621369711 100.00 % 621369711 100.00 %
General Reads 1208461020 97.24 % 607889564 97.83 % 600571456 96.65 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 7067965 0.57 % 3554110 0.57 % 3513855 0.57 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 27210437 2.19 % 9926037 1.60 % 17284400 2.78 %
Bisulfite_reads C2T 621351825 50.00 % 312525275 50.30 % 308826550 49.70 %
Bisulfite_reads G2A 594177160 47.81 % 298918399 48.11 % 295258761 47.52 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 515473740
Average Unique 82.96 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 49010132355 38.66 % 18936241907 29.88 % 30073890448 47.45 %
Base Counts Overall C 13615010085 10.74 % 632109173 1.00 % 12982900912 20.48 %
Base Counts Overall G 13808679083 10.89 % 13194925486 20.82 % 613753597 0.97 %
Base Counts Overall T 48788679717 38.49 % 29964115846 47.28 % 18824563871 29.70 %
Base Counts Overall N 1536919804 1.21 % 652318110 1.03 % 884601694 1.40 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990260725402189
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 590757786



Mapping Quality

Mapping Quality Histogram
S00V65.Bisulfite-Seq.DNA_Methylation.EGAX00001340587_8.mapq.png



Read Length

Read Length Reads
101 621369711
101 621369711



Insert Size Plot

Insert Size Histogram
S00V65.Bisulfite-Seq.DNA_Methylation.EGAX00001340587_8.isize.png