/EXTERNAL BLUEPRINT/mapping_coverage/K006371_8_lane_gembs
BACK
SAMPLE K006371_8_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1205429769 |
100% |
111796227341 |
100% |
| Mapped |
1191175311 |
98.82 % |
110356527083 |
98.71 % |
| Passed |
1024968486 |
85.03 % |
93569637758 |
83.70 % |
| NotPassed |
166206825 |
13.79 % |
16786889325 |
15.02 % |
| |
|
|
|
|
| LowMAPQ |
145719606 |
12.09 % |
14717680206 |
13.16 % |
| MateUnmapped |
14254458 |
1.18 % |
1439700258 |
1.29 % |
| Duplicate |
3031483 |
0.25 % |
306179783 |
0.27 % |
| BadOrientation |
10 |
0.00 % |
1010 |
0.00 % |
| LargeInsertSize |
5272 |
0.00 % |
532472 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17450454 |
1.45 % |
1762495854 |
1.58 % |
| Unmapped |
14254458 |
1.18 % |
1439700258 |
1.29 % |
Base Level Counts
| Bases |
# |
% |
| Total |
103513670628 |
100% |
| Passed |
87919829016 |
84.94 % |
| Trimmed |
4534387624 |
4.38 % |
| Clipped |
130894170 |
0.13 % |
| Overlapping |
9813138700 |
9.48 % |
| LowQuality |
1115421118 |
1.08 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |