/EXTERNAL BLUEPRINT/methylation/K006371_8_lane_gembs

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SAMPLE K006371_8_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26791654 24338873 90.84 %
NonRefCpG 251885 194339 77.15 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006371_8_lane_gembs_coverage_refCpG.png ./IMG//K006371_8_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006371_8_lane_gembs_coverage_nonRefCpG.png ./IMG//K006371_8_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006371_8_lane_gembs_quality_refcpg.png ./IMG//K006371_8_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006371_8_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6334744 11.98 % 5482637 11.04 % 38934 8.12 % 20411 5.10 %
Intermediate (0.3-0.7) 8183732 15.47 % 7272718 14.65 % 86790 18.11 % 62296 15.55 %
Methylated (0.7-1) 38366445 72.55 % 36891479 74.31 % 353484 73.76 % 317863 79.35 %
Median Methylation 0.840 0.850 0.840 0.860