/EXTERNAL BLUEPRINT/K006382_K006412_20_lane_gembs/S00W8Y.Bisulfite-Seq.DNA_Methylation.EGAX00001349849_9

BACK

SAMPLE K006382_K006412_20_lane_gembs LANE S00W8Y.Bisulfite-Seq.DNA_Methylation.EGAX00001349849_9

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 841992682 100.00 % 420996341 100.00 % 420996341 100.00 %
General Reads 823017354 97.75 % 413346805 98.18 % 409670549 97.31 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3047622 0.36 % 1529063 0.36 % 1518559 0.36 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 15927706 1.89 % 6120473 1.45 % 9807233 2.33 %
Bisulfite_reads C2T 423633328 50.31 % 212748347 50.53 % 210884981 50.09 %
Bisulfite_reads G2A 402431648 47.80 % 202127521 48.01 % 200304127 47.58 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 347973455
Average Unique 82.65 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 33339347961 38.82 % 12799180079 29.81 % 20540167882 47.83 %
Base Counts Overall C 9154204122 10.66 % 335623959 0.78 % 8818580163 20.54 %
Base Counts Overall G 9259134325 10.78 % 8936800927 20.81 % 322333398 0.75 %
Base Counts Overall T 33237677627 38.70 % 20445048518 47.61 % 12792629109 29.79 %
Base Counts Overall N 892889529 1.04 % 424973299 0.99 % 467916230 1.09 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992819246098509
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 401685201



Mapping Quality

Mapping Quality Histogram
S00W8Y.Bisulfite-Seq.DNA_Methylation.EGAX00001349849_9.mapq.png



Read Length

Read Length Reads
101 420996341
101 420996341



Insert Size Plot

Insert Size Histogram
S00W8Y.Bisulfite-Seq.DNA_Methylation.EGAX00001349849_9.isize.png