/EXTERNAL BLUEPRINT/mapping_coverage/K006382_K006412_20_lane_gembs
BACK
SAMPLE K006382_K006412_20_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1922866172 |
100% |
170509473758 |
100% |
| Mapped |
1903538855 |
98.99 % |
168557414741 |
98.86 % |
| Passed |
1546327545 |
80.42 % |
132479072431 |
77.70 % |
| NotPassed |
357211310 |
18.58 % |
36078342310 |
21.16 % |
| |
|
|
|
|
| LowMAPQ |
315613450 |
16.41 % |
31876958450 |
18.70 % |
| MateUnmapped |
19327317 |
1.01 % |
1952059017 |
1.14 % |
| Duplicate |
13183571 |
0.69 % |
1331540671 |
0.78 % |
| BadOrientation |
66 |
0.00 % |
6666 |
0.00 % |
| LargeInsertSize |
30500 |
0.00 % |
3080500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
28383723 |
1.48 % |
2866756023 |
1.68 % |
| Unmapped |
19327317 |
1.01 % |
1952059017 |
1.14 % |
Base Level Counts
| Bases |
# |
% |
| Total |
156171698137 |
100% |
| Passed |
124444024758 |
79.68 % |
| Trimmed |
6621752037 |
4.24 % |
| Clipped |
162242430 |
0.10 % |
| Overlapping |
23530383276 |
15.07 % |
| LowQuality |
1413295636 |
0.90 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |