/EXTERNAL BLUEPRINT/K010374_K010526_2_lane_gembs

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SAMPLE K010374_K010526_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 342297190 100.00 % 171148595 100.00 % 171148595 100.00 %
General Reads 328085058 95.85 % 164648354 96.20 % 163436704 95.49 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 4622184 1.35 % 2317495 1.35 % 2304689 1.35 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 9589948 2.80 % 4182746 2.44 % 5407202 3.16 %
Bisulfite_reads C2T 176204450 51.48 % 88438092 51.67 % 87766358 51.28 %
Bisulfite_reads G2A 156502792 45.72 % 78527757 45.88 % 77975035 45.56 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 131940155
Average Unique 77.09 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12603791913 36.10 % 5039058423 28.87 % 7564733490 43.33 %
Base Counts Overall C 4680420547 13.41 % 250399068 1.43 % 4430021479 25.38 %
Base Counts Overall G 4727552095 13.54 % 4482380142 25.68 % 245171953 1.40 %
Base Counts Overall T 12542665564 35.92 % 7512753895 43.04 % 5029911669 28.81 %
Base Counts Overall N 359883261 1.03 % 172565162 0.99 % 187318099 1.07 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990388157360769
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 160325619



Mapping Quality

Mapping Quality Histogram
K010374_K010526_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K010374_K010526_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K010526_1798768_2
EXTERNAL-K010374_1798616_2