/EXTERNAL BLUEPRINT/mapping_coverage/K010527_1_lane_gembs
BACK
SAMPLE K010527_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
305676744 |
100% |
29649148789 |
100% |
| Mapped |
301430142 |
98.61 % |
29220241987 |
98.55 % |
| Passed |
251775353 |
82.37 % |
24205108298 |
81.64 % |
| NotPassed |
49654789 |
16.24 % |
5015133689 |
16.91 % |
| |
|
|
|
|
| LowMAPQ |
37503498 |
12.27 % |
3787853298 |
12.78 % |
| MateUnmapped |
4246602 |
1.39 % |
428906802 |
1.45 % |
| Duplicate |
5193383 |
1.70 % |
524531683 |
1.77 % |
| BadOrientation |
8 |
0.00 % |
808 |
0.00 % |
| LargeInsertSize |
1506 |
0.00 % |
152106 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
6956394 |
2.28 % |
702595794 |
2.37 % |
| Unmapped |
4246602 |
1.39 % |
428906802 |
1.45 % |
Base Level Counts
| Bases |
# |
% |
| Total |
25376208792 |
100% |
| Passed |
22676289655 |
89.36 % |
| Trimmed |
1179304872 |
4.65 % |
| Clipped |
51695815 |
0.20 % |
| Overlapping |
1119404679 |
4.41 % |
| LowQuality |
349513771 |
1.38 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |