/EXTERNAL BLUEPRINT/K006364_20_lane_gembs

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SAMPLE K006364_20_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1250032026 100.00 % 625016013 100.00 % 625016013 100.00 %
General Reads 1209076605 96.72 % 607140218 97.14 % 601936387 96.31 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 12385894 0.99 % 6213308 0.99 % 6172586 0.99 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 28569527 2.29 % 11662487 1.87 % 16907040 2.71 %
Bisulfite_reads C2T 640729999 51.26 % 321748247 51.48 % 318981752 51.04 %
Bisulfite_reads G2A 580732500 46.46 % 291605279 46.66 % 289127221 46.26 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 493950458
Average Unique 79.03 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 45602388885 35.77 % 17858197545 28.01 % 27744191340 43.52 %
Base Counts Overall C 17490697271 13.72 % 878396960 1.38 % 16612300311 26.06 %
Base Counts Overall G 17675414687 13.86 % 16810698683 26.37 % 864716004 1.36 %
Base Counts Overall T 45466204909 35.66 % 27574196770 43.25 % 17892008139 28.07 %
Base Counts Overall N 1268560900 0.99 % 630143368 0.99 % 638417532 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989983976271616
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 591644305



Mapping Quality

Mapping Quality Histogram
K006364_20_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006364_20_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
T14_11.Bisulfite-Seq.DNA_Methylation.EGAX00001312495