/EXTERNAL BLUEPRINT/mapping_coverage/K006364_20_lane_gembs
BACK
SAMPLE K006364_20_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1195377731 |
100% |
105932314725 |
100% |
| Mapped |
1182241068 |
98.90 % |
104605511762 |
98.75 % |
| Passed |
958189850 |
80.16 % |
81976338744 |
77.39 % |
| NotPassed |
224051218 |
18.74 % |
22629173018 |
21.36 % |
| |
|
|
|
|
| LowMAPQ |
191774454 |
16.04 % |
19369219854 |
18.28 % |
| MateUnmapped |
13136663 |
1.10 % |
1326802963 |
1.25 % |
| Duplicate |
13709490 |
1.15 % |
1384658490 |
1.31 % |
| BadOrientation |
30 |
0.00 % |
3030 |
0.00 % |
| LargeInsertSize |
15266 |
0.00 % |
1541866 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
18551978 |
1.55 % |
1873749778 |
1.77 % |
| Unmapped |
13136663 |
1.10 % |
1326802963 |
1.25 % |
Base Level Counts
| Bases |
# |
% |
| Total |
96764055960 |
100% |
| Passed |
77375603140 |
79.96 % |
| Trimmed |
4084781755 |
4.22 % |
| Clipped |
106977784 |
0.11 % |
| Overlapping |
14680739432 |
15.17 % |
| LowQuality |
515953849 |
0.53 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |