/EXTERNAL BLUEPRINT/methylation/K006368_20_lane_gembs

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SAMPLE K006368_20_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24722802 13283507 53.73 %
NonRefCpG 654220 83796 12.81 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006368_20_lane_gembs_coverage_refCpG.png ./IMG//K006368_20_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006368_20_lane_gembs_coverage_nonRefCpG.png ./IMG//K006368_20_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006368_20_lane_gembs_quality_refcpg.png ./IMG//K006368_20_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006368_20_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6076211 14.11 % 3686892 13.14 % 487207 44.23 % 71614 22.87 %
Intermediate (0.3-0.7) 9567426 22.22 % 4671912 16.65 % 292398 26.55 % 81196 25.93 %
Methylated (0.7-1) 27418447 63.67 % 19698063 70.21 % 321890 29.22 % 160370 51.21 %
Median Methylation 0.790 0.830 0.390 0.710