/EXTERNAL BLUEPRINT/K006424_14_lane_gembs

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SAMPLE K006424_14_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1192177248 100.00 % 596088624 100.00 % 596088624 100.00 %
General Reads 1161501793 97.43 % 583241503 97.84 % 578260290 97.01 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5407381 0.45 % 2712761 0.46 % 2694620 0.45 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 25268074 2.12 % 10134360 1.70 % 15133714 2.54 %
Bisulfite_reads C2T 597731149 50.14 % 300120547 50.35 % 297610602 49.93 %
Bisulfite_reads G2A 569178025 47.74 % 285833717 47.95 % 283344308 47.53 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 494916254
Average Unique 83.03 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 46913967700 38.58 % 17919927056 29.47 % 28994040644 47.69 %
Base Counts Overall C 13317885901 10.95 % 524057769 0.86 % 12793828132 21.04 %
Base Counts Overall G 13419795813 11.04 % 12918478449 21.25 % 501317364 0.82 %
Base Counts Overall T 46737578425 38.43 % 28838793018 47.43 % 17898785407 29.44 %
Base Counts Overall N 1212851457 1.00 % 599783356 0.99 % 613068101 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991583310244696
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 567788761



Mapping Quality

Mapping Quality Histogram
K006424_14_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006424_14_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
007MCL.Bisulfite-Seq.DNA_Methylation.EGAX00001364659_14