/EXTERNAL BLUEPRINT/mapping_coverage/K006424_14_lane_gembs
BACK
SAMPLE K006424_14_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1156702103 |
100% |
105594899761 |
100% |
| Mapped |
1145293308 |
99.01 % |
104442611466 |
98.91 % |
| Passed |
982414710 |
84.93 % |
87991873068 |
83.33 % |
| NotPassed |
162878598 |
14.08 % |
16450738398 |
15.58 % |
| |
|
|
|
|
| LowMAPQ |
141152180 |
12.20 % |
14256370180 |
13.50 % |
| MateUnmapped |
11408795 |
0.99 % |
1152288295 |
1.09 % |
| Duplicate |
4801140 |
0.42 % |
484915140 |
0.46 % |
| BadOrientation |
16 |
0.00 % |
1616 |
0.00 % |
| LargeInsertSize |
4890 |
0.00 % |
493890 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
16920372 |
1.46 % |
1708957572 |
1.62 % |
| Unmapped |
11408795 |
0.99 % |
1152288295 |
1.09 % |
Base Level Counts
| Bases |
# |
% |
| Total |
99217080330 |
100% |
| Passed |
82555611386 |
83.21 % |
| Trimmed |
4312670005 |
4.35 % |
| Clipped |
124001876 |
0.12 % |
| Overlapping |
11101205386 |
11.19 % |
| LowQuality |
1123591677 |
1.13 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |