/EXTERNAL BLUEPRINT/methylation/K006424_14_lane_gembs

BACK

SAMPLE K006424_14_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26761117 23436608 87.58 %
NonRefCpG 249666 181160 72.56 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006424_14_lane_gembs_coverage_refCpG.png ./IMG//K006424_14_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006424_14_lane_gembs_coverage_nonRefCpG.png ./IMG//K006424_14_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006424_14_lane_gembs_quality_refcpg.png ./IMG//K006424_14_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006424_14_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 14563239 27.58 % 13108737 26.97 % 133748 28.02 % 101752 26.38 %
Intermediate (0.3-0.7) 13109889 24.83 % 11674168 24.02 % 130333 27.31 % 99634 25.83 %
Methylated (0.7-1) 25135583 47.60 % 23820418 49.01 % 213170 44.67 % 184396 47.80 %
Median Methylation 0.660 0.680 0.630 0.670