/EXTERNAL BLUEPRINT/K006427_18_lane_gembs/B272.Bisulfite-Seq.DNA_Methylation.EGAX00001400365_18

BACK

SAMPLE K006427_18_lane_gembs LANE B272.Bisulfite-Seq.DNA_Methylation.EGAX00001400365_18

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1001368472 100.00 % 500684236 100.00 % 500684236 100.00 %
General Reads 977982372 97.66 % 491504971 98.17 % 486477401 97.16 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2875425 0.29 % 1445222 0.29 % 1430203 0.29 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 20510675 2.05 % 7734043 1.54 % 12776632 2.55 %
Bisulfite_reads C2T 506212953 50.55 % 254390912 50.81 % 251822041 50.30 %
Bisulfite_reads G2A 474644844 47.40 % 238559281 47.65 % 236085563 47.15 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 405473766
Average Unique 80.98 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 38517750624 37.71 % 14644982687 28.68 % 23872767937 46.75 %
Base Counts Overall C 11963944985 11.71 % 592413665 1.16 % 11371531320 22.27 %
Base Counts Overall G 12104682959 11.85 % 11512880662 22.54 % 591802297 1.16 %
Base Counts Overall T 38506481786 37.70 % 23811687649 46.63 % 14694794137 28.77 %
Base Counts Overall N 1046723790 1.02 % 507827409 0.99 % 538896381 1.06 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9986657891542856
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 474923773



Mapping Quality

Mapping Quality Histogram
B272.Bisulfite-Seq.DNA_Methylation.EGAX00001400365_18.mapq.png



Read Length

Read Length Reads
101 500684236
101 500684236



Insert Size Plot

Insert Size Histogram
B272.Bisulfite-Seq.DNA_Methylation.EGAX00001400365_18.isize.png