/EXTERNAL BLUEPRINT/mapping_coverage/K006427_18_lane_gembs
BACK
SAMPLE K006427_18_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
976371443 |
100% |
86928010051 |
100% |
| Mapped |
965796452 |
98.92 % |
85859935960 |
98.77 % |
| Passed |
812014398 |
83.17 % |
70327948506 |
80.90 % |
| NotPassed |
153782054 |
15.75 % |
15531987454 |
17.87 % |
| |
|
|
|
|
| LowMAPQ |
137206236 |
14.05 % |
13857829836 |
15.94 % |
| MateUnmapped |
10574991 |
1.08 % |
1068074091 |
1.23 % |
| Duplicate |
1612701 |
0.17 % |
162882801 |
0.19 % |
| BadOrientation |
18 |
0.00 % |
1818 |
0.00 % |
| LargeInsertSize |
5660 |
0.00 % |
571660 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
14957439 |
1.53 % |
1510701339 |
1.74 % |
| Unmapped |
10574991 |
1.08 % |
1068074091 |
1.23 % |
Base Level Counts
| Bases |
# |
% |
| Total |
82008053021 |
100% |
| Passed |
66040019760 |
80.53 % |
| Trimmed |
3507131842 |
4.28 % |
| Clipped |
88897537 |
0.11 % |
| Overlapping |
11591206978 |
14.13 % |
| LowQuality |
780796904 |
0.95 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |