/EXTERNAL BLUEPRINT/K010530_1_lane_gembs

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SAMPLE K010530_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 274221246 100.00 % 137110623 100.00 % 137110623 100.00 %
General Reads 269859583 98.41 % 135989623 99.18 % 133869960 97.64 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3 0.00 % 1 0.00 % 2 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4361660 1.59 % 1120999 0.82 % 3240661 2.36 %
Bisulfite_reads C2T 137873366 50.28 % 69458392 50.66 % 68414974 49.90 %
Bisulfite_reads G2A 131986220 48.13 % 66531232 48.52 % 65454988 47.74 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 113927247
Average Unique 83.09 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 10829765693 38.72 % 4798236251 34.31 % 6031529442 43.13 %
Base Counts Overall C 2927948396 10.47 % 140969578 1.01 % 2786978818 19.93 %
Base Counts Overall G 2931942844 10.48 % 2771431138 19.82 % 160511706 1.15 %
Base Counts Overall T 10959654620 39.18 % 6135920536 43.87 % 4823734084 34.49 %
Base Counts Overall N 321255539 1.15 % 138726043 0.99 % 182529496 1.31 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 129440786



Mapping Quality

Mapping Quality Histogram
K010530_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K010530_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K010530_1798772_2