/EXTERNAL BLUEPRINT/mapping_coverage/K010530_1_lane_gembs
BACK
SAMPLE K010530_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
265945846 |
100% |
25827753757 |
100% |
| Mapped |
262408824 |
98.67 % |
25470514535 |
98.62 % |
| Passed |
221304616 |
83.21 % |
21318989527 |
82.54 % |
| NotPassed |
41104208 |
15.46 % |
4151525008 |
16.07 % |
| |
|
|
|
|
| LowMAPQ |
31027694 |
11.67 % |
3133797094 |
12.13 % |
| MateUnmapped |
3537022 |
1.33 % |
357239222 |
1.38 % |
| Duplicate |
3916049 |
1.47 % |
395520949 |
1.53 % |
| BadOrientation |
4 |
0.00 % |
404 |
0.00 % |
| LargeInsertSize |
1184 |
0.00 % |
119584 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
6159277 |
2.32 % |
622086977 |
2.41 % |
| Unmapped |
3537022 |
1.33 % |
357239222 |
1.38 % |
Base Level Counts
| Bases |
# |
% |
| Total |
22286376291 |
100% |
| Passed |
19972815139 |
89.62 % |
| Trimmed |
1038796397 |
4.66 % |
| Clipped |
44821392 |
0.20 % |
| Overlapping |
922565372 |
4.14 % |
| LowQuality |
307377991 |
1.38 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |