/EXTERNAL BLUEPRINT/methylation/K010530_1_lane_gembs

BACK

SAMPLE K010530_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 23493356 3565532 15.18 %
NonRefCpG 379472 29892 7.88 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K010530_1_lane_gembs_coverage_refCpG.png ./IMG//K010530_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K010530_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K010530_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K010530_1_lane_gembs_quality_refcpg.png ./IMG//K010530_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K010530_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3308000 9.37 % 286699 3.52 % 155307 26.08 % 11168 11.36 %
Intermediate (0.3-0.7) 10373934 29.39 % 1580468 19.40 % 183782 30.86 % 22975 23.38 %
Methylated (0.7-1) 21617273 61.24 % 6280084 77.08 % 256472 43.06 % 64141 65.26 %
Median Methylation 0.780 0.860 0.620 0.810