/EXTERNAL BLUEPRINT/K006425_11_lane_gembs/1228CLL.Bisulfite-Seq.DNA_Methylation.EGAX00001364660_11

BACK

SAMPLE K006425_11_lane_gembs LANE 1228CLL.Bisulfite-Seq.DNA_Methylation.EGAX00001364660_11

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1210155286 100.00 % 605077643 100.00 % 605077643 100.00 %
General Reads 1181927269 97.67 % 593292362 98.05 % 588634907 97.28 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 6212226 0.51 % 3115453 0.51 % 3096773 0.51 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 22015791 1.82 % 8669828 1.43 % 13345963 2.21 %
Bisulfite_reads C2T 608972443 50.32 % 305665339 50.52 % 303307104 50.13 %
Bisulfite_reads G2A 579167052 47.86 % 290742476 48.05 % 288424576 47.67 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 502508703
Average Unique 83.05 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 47745003790 38.68 % 18246459101 29.56 % 29498544689 47.80 %
Base Counts Overall C 13296316573 10.77 % 540735265 0.88 % 12755581308 20.67 %
Base Counts Overall G 13429580187 10.88 % 12909372922 20.92 % 520207265 0.84 %
Base Counts Overall T 47726084448 38.66 % 29413561197 47.66 % 18312523251 29.67 %
Base Counts Overall N 1238854174 1.00 % 607791101 0.98 % 631063073 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991993485009347
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 578694562



Mapping Quality

Mapping Quality Histogram
1228CLL.Bisulfite-Seq.DNA_Methylation.EGAX00001364660_11.mapq.png



Read Length

Read Length Reads
101 605077643
101 605077643



Insert Size Plot

Insert Size Histogram
1228CLL.Bisulfite-Seq.DNA_Methylation.EGAX00001364660_11.isize.png