/EXTERNAL BLUEPRINT/mapping_coverage/K006425_11_lane_gembs
BACK
SAMPLE K006425_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1177369067 |
100% |
108733191778 |
100% |
| Mapped |
1166194381 |
99.05 % |
107604548492 |
98.96 % |
| Passed |
997085841 |
84.69 % |
90524585952 |
83.25 % |
| NotPassed |
169108540 |
14.36 % |
17079962540 |
15.71 % |
| |
|
|
|
|
| LowMAPQ |
147540430 |
12.53 % |
14901583430 |
13.70 % |
| MateUnmapped |
11174686 |
0.95 % |
1128643286 |
1.04 % |
| Duplicate |
4559271 |
0.39 % |
460486371 |
0.42 % |
| BadOrientation |
10 |
0.00 % |
1010 |
0.00 % |
| LargeInsertSize |
5394 |
0.00 % |
544794 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17003435 |
1.44 % |
1717346935 |
1.58 % |
| Unmapped |
11174686 |
0.95 % |
1128643286 |
1.04 % |
Base Level Counts
| Bases |
# |
% |
| Total |
100696752449 |
100% |
| Passed |
84868227720 |
84.28 % |
| Trimmed |
4433241687 |
4.40 % |
| Clipped |
120149312 |
0.12 % |
| Overlapping |
10052017185 |
9.98 % |
| LowQuality |
1223116545 |
1.21 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |