/EXTERNAL BLUEPRINT/methylation/K006425_11_lane_gembs

BACK

SAMPLE K006425_11_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26860031 23849432 88.79 %
NonRefCpG 255053 190504 74.69 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006425_11_lane_gembs_coverage_refCpG.png ./IMG//K006425_11_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006425_11_lane_gembs_coverage_nonRefCpG.png ./IMG//K006425_11_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006425_11_lane_gembs_quality_refcpg.png ./IMG//K006425_11_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006425_11_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 10967226 20.69 % 9713320 19.80 % 91399 18.78 % 65094 16.31 %
Intermediate (0.3-0.7) 10047880 18.96 % 8862445 18.06 % 106461 21.87 % 78782 19.74 %
Methylated (0.7-1) 31981967 60.35 % 30483290 62.14 % 288872 59.35 % 255201 63.95 %
Median Methylation 0.810 0.820 0.790 0.830