/EXTERNAL BLUEPRINT/K010532_1_lane_gembs

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SAMPLE K010532_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 152461504 100.00 % 76230752 100.00 % 76230752 100.00 %
General Reads 148172191 97.19 % 74682023 97.97 % 73490168 96.40 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 646632 0.42 % 325498 0.43 % 321134 0.42 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3642681 2.39 % 1223231 1.60 % 2419450 3.17 %
Bisulfite_reads C2T 76332462 50.07 % 38467482 50.46 % 37864980 49.67 %
Bisulfite_reads G2A 72486361 47.54 % 36540039 47.93 % 35946322 47.15 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 62020282
Average Unique 81.36 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 6000383599 38.59 % 2311203993 29.72 % 3689179606 47.45 %
Base Counts Overall C 1679007639 10.80 % 80211822 1.03 % 1598795817 20.56 %
Base Counts Overall G 1696829962 10.91 % 1620651609 20.84 % 76178353 0.98 %
Base Counts Overall T 5990322205 38.52 % 3685677435 47.40 % 2304644770 29.64 %
Base Counts Overall N 184530003 1.19 % 77791845 1.00 % 106738158 1.37 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992650179434426
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 71743049



Mapping Quality

Mapping Quality Histogram
K010532_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K010532_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K010532_1798774_2