/EXTERNAL BLUEPRINT/mapping_coverage/K010532_1_lane_gembs
BACK
SAMPLE K010532_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
148107128 |
100% |
13366279389 |
100% |
| Mapped |
146017239 |
98.59 % |
13155200600 |
98.42 % |
| Passed |
124274819 |
83.91 % |
10959216180 |
81.99 % |
| NotPassed |
21742420 |
14.68 % |
2195984420 |
16.43 % |
| |
|
|
|
|
| LowMAPQ |
19113190 |
12.90 % |
1930432190 |
14.44 % |
| MateUnmapped |
2089889 |
1.41 % |
211078789 |
1.58 % |
| Duplicate |
64986 |
0.04 % |
6563586 |
0.05 % |
| BadOrientation |
8 |
0.00 % |
808 |
0.00 % |
| LargeInsertSize |
634 |
0.00 % |
64034 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
2563602 |
1.73 % |
258923802 |
1.94 % |
| Unmapped |
2089889 |
1.41 % |
211078789 |
1.58 % |
Base Level Counts
| Bases |
# |
% |
| Total |
12521280979 |
100% |
| Passed |
10259410872 |
81.94 % |
| Trimmed |
538805517 |
4.30 % |
| Clipped |
17429352 |
0.14 % |
| Overlapping |
1544635447 |
12.34 % |
| LowQuality |
160999791 |
1.29 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |