/EXTERNAL BLUEPRINT/methylation/K010532_1_lane_gembs

BACK

SAMPLE K010532_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24559710 433385 1.76 %
NonRefCpG 486974 1968 0.40 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K010532_1_lane_gembs_coverage_refCpG.png ./IMG//K010532_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K010532_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K010532_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K010532_1_lane_gembs_quality_refcpg.png ./IMG//K010532_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K010532_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5274199 13.13 % 22166 1.83 % 267783 32.55 % 432 4.50 %
Intermediate (0.3-0.7) 13374003 33.29 % 219881 18.13 % 282112 34.30 % 1869 19.46 %
Methylated (0.7-1) 21526890 53.58 % 970824 80.04 % 272681 33.15 % 7305 76.04 %
Median Methylation 0.720 0.870 0.500 0.850