/EXTERNAL BLUEPRINT/mapping_coverage/K006421_12_lane_gembs
BACK
SAMPLE K006421_12_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1156825771 |
100% |
106024100486 |
100% |
| Mapped |
1145528985 |
99.02 % |
104883125100 |
98.92 % |
| Passed |
982957526 |
84.97 % |
88463407741 |
83.44 % |
| NotPassed |
162571459 |
14.05 % |
16419717359 |
15.49 % |
| |
|
|
|
|
| LowMAPQ |
139995232 |
12.10 % |
14139518432 |
13.34 % |
| MateUnmapped |
11296786 |
0.98 % |
1140975386 |
1.08 % |
| Duplicate |
4585240 |
0.40 % |
463109240 |
0.44 % |
| BadOrientation |
10 |
0.00 % |
1010 |
0.00 % |
| LargeInsertSize |
5178 |
0.00 % |
522978 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17985799 |
1.55 % |
1816565699 |
1.71 % |
| Unmapped |
11296786 |
0.98 % |
1140975386 |
1.08 % |
Base Level Counts
| Bases |
# |
% |
| Total |
99271053316 |
100% |
| Passed |
82874280995 |
83.48 % |
| Trimmed |
4333939175 |
4.37 % |
| Clipped |
115751402 |
0.12 % |
| Overlapping |
10691894173 |
10.77 % |
| LowQuality |
1255187571 |
1.26 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |