/EXTERNAL BLUEPRINT/methylation/K006423_1_lane_gembs

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SAMPLE K006423_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26853401 23612419 87.93 %
NonRefCpG 256987 190179 74.00 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006423_1_lane_gembs_coverage_refCpG.png ./IMG//K006423_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006423_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006423_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006423_1_lane_gembs_quality_refcpg.png ./IMG//K006423_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006423_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 10958217 20.69 % 9617133 19.74 % 96974 19.75 % 69700 17.41 %
Intermediate (0.3-0.7) 10791015 20.37 % 9465913 19.43 % 114547 23.33 % 85353 21.32 %
Methylated (0.7-1) 31223656 58.94 % 29631643 60.83 % 279484 56.92 % 245263 61.27 %
Median Methylation 0.790 0.800 0.770 0.800