/EXTERNAL BLUEPRINT/K006428_17_lane_gembs/B272.Bisulfite-Seq.DNA_Methylation.EGAX00001400366_17

BACK

SAMPLE K006428_17_lane_gembs LANE B272.Bisulfite-Seq.DNA_Methylation.EGAX00001400366_17

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1051383942 100.00 % 525691971 100.00 % 525691971 100.00 %
General Reads 1028051514 97.78 % 516173980 98.19 % 511877534 97.37 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2944554 0.28 % 1477171 0.28 % 1467383 0.28 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 20387874 1.94 % 8040820 1.53 % 12347054 2.35 %
Bisulfite_reads C2T 532453273 50.64 % 267331213 50.85 % 265122060 50.43 %
Bisulfite_reads G2A 498542795 47.42 % 250319938 47.62 % 248222857 47.22 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 427853318
Average Unique 81.39 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 40458096767 37.73 % 15390693628 28.70 % 25067403139 46.75 %
Base Counts Overall C 12562219218 11.71 % 619567622 1.16 % 11942651596 22.27 %
Base Counts Overall G 12674819178 11.82 % 12062351829 22.50 % 612467349 1.14 %
Base Counts Overall T 40449756869 37.72 % 25014578321 46.65 % 15435178548 28.79 %
Base Counts Overall N 1096270052 1.02 % 533389642 0.99 % 562880410 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9986578807664223
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 501269478



Mapping Quality

Mapping Quality Histogram
B272.Bisulfite-Seq.DNA_Methylation.EGAX00001400366_17.mapq.png



Read Length

Read Length Reads
101 525691971
101 525691971



Insert Size Plot

Insert Size Histogram
B272.Bisulfite-Seq.DNA_Methylation.EGAX00001400366_17.isize.png