/EXTERNAL BLUEPRINT/mapping_coverage/K006428_17_lane_gembs
BACK
SAMPLE K006428_17_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1026317266 |
100% |
91292023136 |
100% |
| Mapped |
1016164849 |
99.01 % |
90266629019 |
98.88 % |
| Passed |
856818478 |
83.48 % |
74172645548 |
81.25 % |
| NotPassed |
159346371 |
15.53 % |
16093983471 |
17.63 % |
| |
|
|
|
|
| LowMAPQ |
144448706 |
14.07 % |
14589319306 |
15.98 % |
| MateUnmapped |
10152417 |
0.99 % |
1025394117 |
1.12 % |
| Duplicate |
1735766 |
0.17 % |
175312366 |
0.19 % |
| BadOrientation |
26 |
0.00 % |
2626 |
0.00 % |
| LargeInsertSize |
5886 |
0.00 % |
594486 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13155987 |
1.28 % |
1328754687 |
1.46 % |
| Unmapped |
10152417 |
0.99 % |
1025394117 |
1.12 % |
Base Level Counts
| Bases |
# |
% |
| Total |
86533205309 |
100% |
| Passed |
69648769411 |
80.49 % |
| Trimmed |
3695558111 |
4.27 % |
| Clipped |
92771959 |
0.11 % |
| Overlapping |
12267787802 |
14.18 % |
| LowQuality |
828318026 |
0.96 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |