/EXTERNAL BLUEPRINT/methylation/K006428_17_lane_gembs

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SAMPLE K006428_17_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26839124 23629883 88.04 %
NonRefCpG 268006 188469 70.32 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006428_17_lane_gembs_coverage_refCpG.png ./IMG//K006428_17_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006428_17_lane_gembs_coverage_nonRefCpG.png ./IMG//K006428_17_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006428_17_lane_gembs_quality_refcpg.png ./IMG//K006428_17_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006428_17_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6208353 11.75 % 5310826 10.93 % 52328 10.25 % 22086 5.47 %
Intermediate (0.3-0.7) 6716705 12.72 % 5543525 11.41 % 82817 16.22 % 52280 12.95 %
Methylated (0.7-1) 39891749 75.53 % 37734545 77.66 % 375341 73.53 % 329492 81.59 %
Median Methylation 0.870 0.880 0.860 0.880