/EXTERNAL BLUEPRINT/K006320_8_lane_gembs/5.2.Bisulfite-Seq.DNA_Methylation.EGAX00001223315_8

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SAMPLE K006320_8_lane_gembs LANE 5.2.Bisulfite-Seq.DNA_Methylation.EGAX00001223315_8

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 324569034 100.00 % 162284517 100.00 % 162284517 100.00 %
General Reads 319207906 98.35 % 160868562 99.13 % 158339344 97.57 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1 0.00 % 0 0.00 % 1 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 5361127 1.65 % 1415955 0.87 % 3945172 2.43 %
Bisulfite_reads C2T 163010637 50.22 % 82126403 50.61 % 80884234 49.84 %
Bisulfite_reads G2A 156197270 48.12 % 78742159 48.52 % 77455111 47.73 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 134971434
Average Unique 83.17 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12830290328 38.76 % 5725096113 34.59 % 7105194215 42.92 %
Base Counts Overall C 3453241998 10.43 % 164562515 0.99 % 3288679483 19.87 %
Base Counts Overall G 3463168538 10.46 % 3274669375 19.78 % 188499163 1.14 %
Base Counts Overall T 12980768603 39.21 % 7224487879 43.64 % 5756280724 34.77 %
Base Counts Overall N 378572001 1.14 % 164204852 0.99 % 214367149 1.30 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 153462041



Mapping Quality

Mapping Quality Histogram
5.2.Bisulfite-Seq.DNA_Methylation.EGAX00001223315_8.mapq.png



Read Length

Read Length Reads
101 162284517
101 162284517



Insert Size Plot

Insert Size Histogram
5.2.Bisulfite-Seq.DNA_Methylation.EGAX00001223315_8.isize.png