/EXTERNAL BLUEPRINT/mapping_coverage/K006320_8_lane_gembs
BACK
SAMPLE K006320_8_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
313565471 |
100% |
30947055323 |
100% |
| Mapped |
309356134 |
98.66 % |
30521912286 |
98.63 % |
| Passed |
260126951 |
82.96 % |
25549764803 |
82.56 % |
| NotPassed |
49229183 |
15.70 % |
4972147483 |
16.07 % |
| |
|
|
|
|
| LowMAPQ |
36817416 |
11.74 % |
3718559016 |
12.02 % |
| MateUnmapped |
4209337 |
1.34 % |
425143037 |
1.37 % |
| Duplicate |
5644144 |
1.80 % |
570058544 |
1.84 % |
| BadOrientation |
6 |
0.00 % |
606 |
0.00 % |
| LargeInsertSize |
1046 |
0.00 % |
105646 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
6766571 |
2.16 % |
683423671 |
2.21 % |
| Unmapped |
4209337 |
1.34 % |
425143037 |
1.37 % |
Base Level Counts
| Bases |
# |
% |
| Total |
26203497671 |
100% |
| Passed |
23905776885 |
91.23 % |
| Trimmed |
1249034704 |
4.77 % |
| Clipped |
51748306 |
0.20 % |
| Overlapping |
601984562 |
2.30 % |
| LowQuality |
394953214 |
1.51 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |